PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen01g039770.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bHLH
Protein Properties Length: 605aa    MW: 67290 Da    PI: 7.2654
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen01g039770.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.51e-12434480455
                       HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                       +h e+Er+RR+++N++f  Lr ++P+ +      K++Ka+ L  A+ YI +Lq
  Sopen01g039770.1 434 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAIAYITELQ 480
                       799***********************66......*****************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.1E-5548236IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.85430479IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.19E-18433492IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.90E-14433484No hitNo description
PfamPF000103.4E-10434480IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.6E-18434491IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-16436485IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 605 aa     Download sequence    Send to blast
MVTGNMLWSG EDKAMVASVL GKEAFEYLMS GSVSAECSLM AIGNDQNLQN KLSDLVERPN  60
AANFSWNYAI FWQISRSKSG ELVLGWGDGC CREPKEGEER EVKKIFNLRL DDEGQQRMRK  120
RVLQKLHMLF GGTDEDNYAF GLDRVTDTEM FFLASMYFSF PRGEGGPGKC FGSGKYLWLS  180
DALTSNLDYC ARSFLAKSAG MQTIVLIPTD VGVVELGSVR SIPESLELLQ NIKSCFSSFL  240
SLVRDKQAAV IAVVPEKNEG NNPRLSNSGA VTERTDGNPK IFGHDLNSGT HFREKLAVRK  300
AEERPWDMYQ NGNRMPFVNA RNGLNPASWA QFSNVKLGKP VELYGPPTPG HNLINGGREE  360
FRLNNFQHQK PAARMQIDFT GATSRTIVSP AHNVESEHSD VEASCKEDRA GPVDEKRPRK  420
RGRKPANGRE EPLNHVEAER QRREKLNQRF YALRAVVPNI SKMDKASLLG DAIAYITELQ  480
KKLRDMESER ELRLGSTSRD AIASEDSPSS EIQIRGPDIN IEAANDEVIV KVSCSLETHP  540
LSRIIQIFKE AQINVVESKL SAGNGTVYHT FVIKSSGSEQ LTKEKLLAAF SSESNSLRQL  600
SPVGQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A1e-25442375193Transcription factor MYC3
4rqw_B1e-25442375193Transcription factor MYC3
4rs9_A1e-25442375193Transcription factor MYC3
4yz6_A1e-25442375193Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1415423KRPRKRGRK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00100PBMTransfer from AT1G01260Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754400.0HG975440.1 Solanum pennellii chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015063116.10.0PREDICTED: transcription factor bHLH13-like isoform X1
SwissprotQ9LNJ50.0BH013_ARATH; Transcription factor bHLH13
TrEMBLK4AZZ40.0K4AZZ4_SOLLC; Uncharacterized protein
STRINGSolyc01g096050.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA35852348
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01260.30.0bHLH family protein